List of Publications Alberto F, A. Whitmer, N. C. Coelho, M. Zippay, E. Varela-Alvarez, P.T., Raimondi, D. C. Reed and E. Serro. 2009. Microsatellite markers for the giant kelp Macrocystis pyrifera. Conservation Genetics 10:1915-1917 Alberto F, P Raimondi, DC Reed, NC Coelho, R Leblois, A Whitmer, E Serao. 2010. Habitat continuity and geographic distance predict population genetic differentiation in giant kelp. Ecology 91:49-56 Allison, G., J. Lubchenco and M.H. Carr. 1998. Marine reserves are necessary but not sufficient for marine conservation. Ecological Applications 8(1) Supplement:S79-S92. Altstatt J.A., Ambrose, R.A., Engel, J.M., Haaker, P.L., Lafferty, K.D., and Raimondi, P.T. 1996. Recent declines in black abalone Haliotis cracherodii on the mainland coast of central California. MEPS 142: 185-192. Ambrose, R.A., Boland J., Murdoch, W., Raimondi, P.T., and Reed, D.C. 1995. The San Onofre nuclear generating station mitigation reef; monitoring issues. Proceedings ECOSET Ô95 International conference on ecological system enhancement technology for aqua Ambrose, R.A., Raimondi, P.T., Engel, J., Wilson, M. and Altstatt, J. 1995. Inventory of shoreline resources of Santa Barbara county. Minerals Management Service. 120 pages. Ambrose, R.A., Raimondi, P.T. and Engel, J. 1994. Final Study Plan for inventory of coastal ecological resources of the Northern Channel Islands. California Coastal Commission. 28 pages. Anderson, T.W., C.T. Bartels, M.A. Hixon, E. Bartels, M.H. Carr, and J.M. Shenker. 2002. Current flow and catch efficiency in sampling settlement-stage larvae of coral-reef fishes. Fishery Bulletin 100:404-413. Anderson, T.W., M.H. Carr, and M.A Hixon. 2007. Patterns and mechanisms of variable settlement and recruitment of a coral reef damselfish. Marine Ecology Progress Series 350:109-116. Anderson T.W. and M.H. Carr. 1998. BINCKE: A highly efficient net for collecting reef-associated fishes. Environmental Biology of Fishes 51:111-115. Barnett, A. M., Raimondi, P.T., and Krause, P.R. 1995. Effects of offshore oil and gas development on marine larval settlement: field experiments on the outer continental shelf off Point Arguello, California. In: Monitoring Assessment of long-term chan Barnett, A.M. and Raimondi, P.T. 1994. Monitoring of long term changes in biological communities in the Santa Maria Basin: Phase 3 final one year report. Minerals Management Service: 93-0040. Sections on larval experiments and integration. Beldade, Ricardo; Cudney-Bueno, Richard; Raimondi, Peter; Bernardi, Giacomo. Isolation and characterization of 13 polymorphic microsatellite markers from the Gulf coney, Epinephelus acanthistius. In press: Molecular Ecology Resources Bergen, L. and M.H Carr. 2004. Designing the Channel Islands marine reserves: a case study of science-based reserve design. Current: The Journal of Marine Education 20:13-16. Bergen, L.K. and M.H. Carr. 2003. Science as a Catalyst for Policy: Informing the Development of Marine Reserves. Environment 45:8-19. Blanchette C.A., P.T. Raimondi and B.R Broitman. 2008. SPATIAL PATTERNS OF INTERTIDAL COMMUNITY STRUCTURE ACROSS THE CALIFORNIA CHANNEL ISLANDS AND LINKS TO OCEAN TEMPERATURE. Channel Islands Symposium proceedings Blanchette CA, CM Miner, PT Raimondi, D Lohse, KEK. Heady and BR. Broitman. 2008. Biogeographical patterns of rocky intertidal communities along the Pacific coast of North America. Journal of Biogeography, 35:1593-1607 Boxshall A and P.T. Raimondi. 2 Broitman,B.R., C.A. Blanchette2, B.A. Menge3, J. Lubchenco3, M. Foley4, P.A. Raimondi4, C. Krenz3, D. Lohse4 and S.D. Gaines2. 2008. Spatial and temporal variability in the recruitment of intertidal invertebrates along the West coast of the U.S.. Eco Burford, Martha O. , M.H. Carr, and G. Bernardi. (in press) Age-structured analysis of the genetic structure of blue rockfish (Sebastes mystinus) reveals temporal and geographic variation within and between cryptic species. Marine Ecology Progress Series Caley, M.J., M.H. Carr, M.A. Hixon, T.P. Hughes, G.P. Jones, and B.A. Menge. 1996. Recruitment and the population dynamics of open marine populations. Annual Review of Ecology and Systematics 27:477-500. Carr, M.H., C.B. Woodson, O.M. Cheriton, D. Malone, M.A. McManus, and P.T. Raimondi. 2011. Knowledge through partnerships: integrating marine protected area monitoring and ocean observing systems. Frontiers in Ecology and the Environment 9:342-350. Carr, M.H., D.P. Malone, M.A. Hixon, S.J. Holbrook and R.J. Schmitt. (in press) How SCUBA changed our understanding of nature: underwater breakthroughs in reef fish ecology. In: Research and Discoveries: The Revolution of Science through Scuba Proceedings Carr, M.H., E. Saarman and M. Caldwell. 2010. ÒRules of thumbÓ in science-based environmental policy: CaliforniaÕs Marine Life Protection Act as a case study. Stanford Journal of Law, Science and Policy (http://www.stanford.edu/group/sjlsp/cgi-bin/users_ Carr, M.H., J.E. Neigel, J A. Estes, S.J. Andelman, R.R. Warner, and J.L. Largier. 2003. Comparing marine and terrestrial ecosystems: implications for the design of coastal marine reserves. Ecological Applications 13:S90-S107. Carr, M.H., T.W. Anderson, and M.A. Hixon. 2002. Biodiversity, population regulation, and the stability of coral-reef fish communities. Proceedings of the National Academy of Sciences 99:11241-11245. Carr, M.H. 1989. Effects of macroalgal assemblages on the recruitment of temperate zone reef fishes. Journal of Experimental Marine Biology and Ecology 126:59-76. Carr, M.H. 1991. Habitat selection and recruitment of an assemblage of temperate zone reef fishes. Journal of Experimental Marine Biology and Ecology 146:113-137. Carr, M.H. 1994. Effects of macroalgal dynamics on recruitment of a temperate reef fish. Ecology 75:1320-1333. Carr, M.H. 1994. Predicting the recruitment of temperate reef fishes in response to changes in macrophyte density caused by disturbance. pages 255-269 In: D.J. Stouder, K.L. Fresh and R.J. Feller (eds.), Theory and Application of Fish Feeding Ecology. Carr, M.H. 2000. Marine protected areas: challenges and opportunities for understanding and conserving coastal marine ecosystems. Environmental Conservation 27:106-109. Carr, M.H. and C. Syms. 2006. Chapter 15: Recruitment. pp. 411-427 In: Allen, L.G., D.J. Pondella II, and M.H. Horn (eds.) The Ecology of California Marine Fishes. University of California Press, Berkeley, CA. Carr, M.H. and D.C. Reed. 1992. Harvest refuges and their potential for enhancing reef fisheries in Southern California. pages 63-6 In: P.M. Grifman and SE Yoder (eds.), Perspectives on the Marine Environment. University of Southern California Sea G Carr, M.H. and D.C. Reed. 1993. Conceptual issues relevant to marine harvest refuges: examples from temperate reef fishes. Canadian Journal of Aquatic Sciences and Fisheries 50:2019-2028. Carr, M.H. and M.A. Hixon. 1995. Predation effects on early survivorship of coral reef fishes. Marine Ecology Progress Series 124:31-42. Carr, M.H. and M.A. Hixon. 1997. Artificial reefs: the importance of comparisons with natural reefs. Fisheries 22(4):28-33. Carr, M.H. and P.T. Raimondi. 1999. Marine protected areas as a precautionary approach to management. California Cooperative Oceanic Fisheries Investigations Reports 40:71-76. Carr, M.H. and Raimondi, P.T. 1998. Concepts relevant to the design and evaluation of harvest reserves. Proceedings of workshop on rockfish refugia. Carr, M.H. and Raimondi, P.T. 1999. Marine protected areas as a precautionary approach to management. California Cooperative Oceanic Fisheries Investigations Reports 40:1-6. Carr M. H., McGinnis M.V., Forrester G.E., Harding G. and P.T. Raimondi. 2003. Consequences of alternative decommissioning options to reef fish assemblages and implications for decommissioning policy. MMS OCS Study 2003-053. Coastal Research Center, M Caselle, J.E., M.H. Carr, D. Malone, J.R. Wilson and D.E. Wendt. 2010. Can we predict interannual and regional variation in delivery of pelagic juveniles to nearshore populations of rockfishes (genus Sebastes) using simple proxies of ocean conditions? CalCOFI 51:91-105. Cole, R.G., C. Syms, N. K. Davey, N. Gust, P. Notman, R. Stewart, C. Radford, G. Carbines, M.H. Carr and A. G. Jeffs. 2007. Does breathing apparatus affect fish counts and observations? A comparison at three New Zealand fished and protected areas. Marine Biology 150:1379-1395. Conway-Cranos T, PT Raimondi. Spatial and temporal variation in recruitment to rocky shores: Relationship to recovery rates of intertidal communities. 53 pages. In Press. Minerals Management Service. Crawford G., RÊGaddam,ÊPTÊRaimondi,ÊPÊNelson and WÊSydeman. 2008. Tools and Approaches for Detecting Ecological Changes Resulting from WEC Development. In: DEVELOPING WAVE ENERGY IN COASTAL CALIFORNIA: POTENTIAL SOCIO-ECONOMIC AND ENVIRONMENTAL EFFECTS Cudney-Bueno R, MF Lavin, SG. Marinone, PT Raimondi and WW. Shaw. 2009. Rapid Effects of Marine Reserves via Larval Dispersal. PLoS One: 4(1): e4140(1-7). D’Amore, A., Hemingway, V., Wasson, K. 2009. Do a threatened native amphibian and its invasive congener differ in response to human alteration of the landscape? Biological Invasions 12(1):145-153. D’Amore, A., Kirby, E., Hemingway, V. 2009. Reproductive Interference by an Invasive Species: An Evolutionary Trap? Herpetological Conservation and Biology 4(3):325-330. D’Amore, A., Kirby, E., McNicholas, M. 2009. Invasive species shifts ontogenetic resource partitioning and microhabitat use of a threatened native amphibian. Aquatic Conservation: Marine and Freshwater Ecosystems 19:534-541. Donlan C. Josh , Hctor Avila-Villegas, Daniel Bercovich Ortega, Noah Biavaschi, Natasha Bodorff, Rick Boyer, Tosha Comendant1, Donald A. Croll, Richard Cudney-Bueno, Ricardo Galvn de la Rosa, Gregg R. Howald, Luis Felipe Lozano-Romn, Carlos Morales, Ol D'Amore, A. 2011. The American bullfrog, Lithobates (Rana) catesbeiana. In: A Handbook of Global Freshwater Invasive Species. Ed: Francis, R.A. Kings College, London, UK. Engel, J, Ambrose, R.A., Raimondi, P.T., Murray, S.N., Wilson, M. and Sapper, S. 1998. Rocky Intertidal resources in San Luis Obispo, Santa Barbara, and Orange Counties, 1997 Annual report. Minerals Management Service. OCS Study 98-0011. 73 pages. Engel, J., Ambrose, R.A. and Raimondi, P.T. 1997. Synopsis of the interagency rocky intertidal monitoring network workshop. Minerals Management Service. OCS Study 97-0012. Engle, J., Alstatt, J., Raimondi, P.T. and Ambrose, R.A. 1994. Rocky intertidal monitoring handbook for inventory of intertidal resources in Santa Barbara County. U.S. Minerals Management Service, Pacific OCS Region, Camarillo, CA. 92 pages. FILIPE ALBERTO,* PETER T. RAIMONDI,à DANIEL C. REED,¤ JAMES R. WATSON,¦ DAVID A. SIEGEL,¦ SATOSHI MITARAI,¦** NELSON COELHO,* ESTER A. SERRÌO. Isolation by oceanographic distance explains genetic structure for Macrocystis pyrifera in the Santa Barbara Foley, M.M., B.S. Halpern, F. Micheli, M.H. Armsby, M.R. Caldwell, C.M. Crain, E. Prahler, N. Rohr, D. Sivas, M.W. Beck, M.H. Carr, L.B. Crowder, J.E. Duffy, S.D. Hacker, K. L. McLeod, S.R. Palumbi, C.H. Peterson, H.M. Regan, M.H. Ruckelshaus, P.A. Sandif, Robert S. Steneck. 2010. Guiding ecological principles for marine spatial planning. Marine Policy 34:955-966. Forde, S.E. and P.T. Raimondi. 2004. An experimental test of the effects of variation in recruitment intensity on intertidal community structure. Journal of Experimental Marine Biology and Ecology 301:1-14 Foster, M.S., D.C. Reed, M.H. Carr, P.K. Dayton, D.P. Malone and J.S. Pearse. (in press) Kelp forests on California. In: Research and Discoveries: The Revolution of Science through Scuba Proceedings. Smithsonian Scholarly Press. In: Research and Discoveri Gaines S.D., C. White, M.H. Carr and S. Palumbi. 2010. Designing marine reserve networks for both conservation and fisheries management. Proceedings of the National Academy of Sciences 107:18286-18293. Gaylord, B., D.C. Reed, L. Washburn and P.T. Raimondi. 2004 Physical-biological coupling in spore dispersal of kelp forest macroalgae. Journal of Marine Systems, 49:19-39 Gaylord, B., D.C. Reed, L. Washburn and P.T. Raimondi. 2006. Macroalgal spore dispersal in coastal environments: Mechanistic insights revealed by theory and experiment. Ecological Monographs, 76: 481-502 Gaylord, B., Reed, D.C., Raimondi, P.T., Washburn, L., and McLean, S.R. 2002. A physically based model of macroalgal spore dispersal in the wave and current dominated nearshore. Ecology. 83: 1239-1251 Gaylord, B., S.D. Gaines, D.A. Siegel, and M.H. Carr. 2005. Consequences of population structure and life history for fisheries yields using marine reserves. Ecological Applications 15:2180-2191. Gaylord B, JH. Rosman, DC. Reed, JR. Koseff, J Fram, S MacIntyre, K Arkema, C McDonald, JL. Largier, MA. Brzezinski, PT. Raimondi, SG. Monismith, and B Mardian, 2007. Spatial patterns of flow and their modification within and around a giant kelp forest. Limnol. Oceanogr. 52(5): 1838–1852 Graham, M.B., B.S. Halpern, and M.H. Carr. 2008. Diversity and dynamics of California subtidal kelp forests. Pages 103-134 in T.R. McClanahan and G. M. Branch (eds), Food Webs and the Dynamics of Marine Reefs, Oxford University Press. Hamilton, S. L. , J.E. Caselle, D. Malone, and M. H. Carr. 2010. Incorporating biogeography into evaluations of the Channel Islands marine reserve network. Proceedings of the National Academy of Sciences 107:18272-1827. Hernandez-Carmona, G., B. Hughes, and M.H. Graham. 2006. Reproductive longevity of drifting kelp Macrocystis pyrifera(Phaeophyceae) in Monterey Bay, USA. Journal of Phycology 42 :1199-1207. Hixon, M.A. and M.H. Carr. 1997. Synergistic predation, density dependence, and population regulation in marine fish. Science 277(15 August):946-949. Holbrook, S.J., Ambrose, R.F., Botsford, L., Carr, M.H., Raimondi, P.T., and Tegner, M.J. 2000. Ecological issues related to decommissioning of CaliforniaÕs offshore production platforms. Report to the University of California Marine Council. 41 pages Holbrook, S.J., M.H. Carr, R.J. Schmitt and J.A. Coyer. 1990. The effect of giant kelp on local abundance of reef fishes: the importance of ontogenetic resource requirements. Bulletin of Marine Science 41:104-114. Hughes, B., J. Haskins, and K. Wasson. 2010. Assesment of the effects of nutrient loading in estuarine wetlands of the Elkhorn Slough watershed: a regional eutrophication report card. Elkhorn Slough Technical Report Series 2010:1. Hughes, B. 2009. Synthesis for management of eutrophication issues in Elkhorn Slough. Elkhorn Slough Technical Report Series 2009:1. Hughes, B.B., J.C. Haskins, K. Wasson, and E. Watson. 2011. Identifying factors that influence expression of eutrophication in a central California estuary. Marine Ecology Progress Series. 439:31-43. Hughes, B.B. 2010. Variable effects of a kelp foundation species on rocky intertidal diversity and species interactions in central California. Journal of Experimental Marine Biology and Ecology 393 :90-99. Keough, M.J., and Raimondi, P.T. 1995. Responses of settling invertebrate larvae to microbial films, II: Effects of different types of films. JEMBE 185:235-253. Keough, M.J., and Raimondi, P.T. 1996. Responses of settling invertebrate larvae to microbial films: effects of large scale variation in films. JEMBE 207: 59-78. Keough, M.J and Raimondi, P.T. 1993. Robustness of estimates of recruitment for sessile invertebrates. Bur. Rural. Res. Proc. 16: 33-39. Lambrecht, S.C. and D'Amore A. 2010. Solarization for non-native plant control in cool, coastal California. Ecological Restoration 28: 424-426. Lane JQ, PT. Raimondi, RM. Kudela. 2009. Development of a logistic regression model for the prediction of toxigenic Pseudo-nitzschia blooms in Monterey Bay, California. Marine Ecology Progress Series, 383:37-51 Lively, C.M., Raimondi, P.T. and Delph, L.F. 1993. Intertidal community structure: space-time interactions in the Northern Gulf of California. Ecology 74:162-173. Lively, C.M. and Raimondi, P.T. 1987. Desiccation, predation, and mussel-barnacle interactions in the northern Gulf of California. Oecologia 74: 304-309. Lohse D. P. and P. T. Raimondi. The life of an intertidal barnacle. Encyclopedia of Tidepools, UC Press. Mark W. Denny and Steven D. Gaines, Editors-in-Chief. In Press Lohse DP, RN Gaddam, PT Raimondi. 2008. Predicted effects of WEC on communities in the nearshore environment. In: DEVELOPING WAVE ENERGY IN COASTAL CALIFORNIA: POTENTIAL SOCIO-ECONOMIC AND ENVIRONMENTAL EFFECTS. PIER Project Report CEC-500-2008-083: Love, M.S., M.H. Carr and L.J. Haldorson. 1991. The ecology of substrate-associated juveniles of the genus Sebastes. Environmental Biology of Fishes 30:225-243. Luengen, A.C., Friedman, C.S., Raimondi, P.T., and Flegal, A.R. 2004. Evaluation of immune responses as indicators of contamination in San Francisco Bay, CA; Development of a novel phagocytosis and phagocytic index method for mussels. Marine Environmental Research 57:197-212. Luengen AC, PT Raimondi and AR Flegal, 2007 Contrasting biogeochemistry of six trace metals during the rise and decay of a spring phytoplankton bloom in San Francisco Bay. LIMNOLOGY AND OCEANOGRAPHY 52 (3): 1112-1130 M.H. Carr, C.B. Woodson, O.M. Cheriton, D. Malone, M.A. McManus, P.T. Raimondi. Knowledge through partnerships: Integrating marine protected area monitoring and ocean observing systems. In press: Frontiers in Ecology and the Environment Mazzillo F, C Pomeroy C, J Kuo , PT. Raimondi, and R. Prado, MW. Silver. 2010. Angler exposure to domoic acid via consumption of contaminated fishes. Aquatic Biology: 9:1-12 Menge B.A., Blanchette C, Raimondi P.T., Gaines S., Lubchenco J, Lohse D., Hudson G., Foley M., and J. Pamplin. 2004. Geographic variation in keystone predation: a whole-coast experiment. Ecological Monographs, 74:663-684 Menge Bruce A ; Blanchette Carol A; Freidenburg Tess L ; Gaines Steven D; Lubchenco Jane ; Lohse David; Raimondi Peter. Cross-scale linkages between bottom-up factors and interaction strength in rocky intertidal communities. [Meeting] Ecological Society o Minchinton T.E and P.T Raimondi. 2004. Effect of temporal and spatial separation of samples on estimation of Impacts. Coastal Research Center, Marine Science Institute, University of California, Santa Barbara, California. MMS Cooperative Agreement N Miner, CM, JM Altstatt, PT Raimondi, and TE Minchinton. 2006. Recruitment failure and shifts in community structure following mass mortality of black abalone limit its prospects for recovery. MARINE ECOLOGY-PROGRESS SERIES 327: 107-117 Miner M., PT. Raimondi, R Ambrose, J Engle and S. Murray. 2005. Monitoring of Rocky Intertidal Resources Along the Central and Southern California Mainland: Comprehensive Report (1992-2003) for San Luis Obispo, Santa Barbara, Ventura, Los Angeles, and O Morse, D.E., Morse, A., Hooker, N. and Raimondi, P.T. 1994. Morphogen-based chemical flypaper for Agaricia humilis larvae. Biological Bulletin 186:172-181. Morse, D.E., Morse A.N.C. and Raimondi, P.T. 1995 Molecular cues from the environment controlling site-specific recruitment: Morphogen-based "flypaper" for larvae as a tool for manipulative experiments. Journal of Cellular Biochemistry Supplement, n.19 Murray, S.N., R.F. Ambrose, J.A. Bohnsack, L.W. Botsford, M.H. Carr, G.E. Davis, P.K. Dayton, D. Gotshall, D.R. Gunderson, M.A. Hixon, J. Lubchenco, M. Mangel, A. MacCall, D.A. McArdle, J.C. Ogden, J. Roughgarden, R.M. Starr, M.J. Tegner, and M.M. Yoklavi Murray SN, Pete Raimondi, and SB. Weisberg. In Pursuit of Bio-Criteria for Evaluating the Condition of Rocky Intertidal Communities: Report of a Workshop Sponsored by the University of Southern California Sea Grant Program with Assistance from the Burea Pearse, J.S., M.H. Carr, C.H. Baxter, J.M. Watanabe, M.S. Foster, D.L. Steller, J.A. Coyer, B. Konar, D.O. Duggins, P.K. Dayton. (in press) Kelpbeds as classrooms: perspectives and lessons learned. In: Research and Discoveries: The Revolution of Science t Pfeiffer-Hoyt, AS, MA. McManus, PT Raimondi, and Y Chao. 2007. Dispersal of barnacle larvae along the central California coast: A modeling study. Limnology and Oceanography 52:1559Ð1569 Raimondi, P.T., Barnett, A.M. and Krause, P.R. 1995. Effects of offshore oil and gas development on marine larval settlement: in situ manipulated field experiments. In: Monitoring Assessment of long-term changes in biological communities in the Santa M Raimondi, P.T., Barnett, A.M. and Krause, P.R. 1997. The effects of drilling muds on marine invertebrate larvae and adults. Environmental Toxicology and Chemistry V16 N6:1218-1228. Raimondi, P.T., Engel, J., Ambrose, R.A., Murray, S.N., Wilson, M. and Sapper, S. 1998. Rocky Intertidal resources in San Luis Obispo, Santa Barbara, and Orange Counties, 3 year Report. Minerals Management Service. OCS Study 98-0000. 103 pages. Raimondi, P.T., Forde, S., Delph, L. and Lively, C.M. 2000. 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Plenum Press, New York Raimondi, PT, R Sagarin, R Ambrose, C Bell, M George, S Lee, D Lohse, C Miner, S Murray. 2007. Conspicuous color patterns in the sea star Pisaster ochraceus. PACIFIC SCIENCE 61 (2): 201-210. Raimondi, PT. 2008. Variation in impact estimation based on different measures of acceptable uncertainty. In Press, California Energy Commission Reports Raimondi PT. 2 Raimondi PT. 2006. Written summary of MARINE / PISCO intertidal biological data for Hopkins Marine Station, Fall 1999 through Spring 2006: Data assessment for ASBS/ Ocean Plan. California State Water Board. 179 pages. Reed, D.C., A. Rassweiler, M.H. Carr, K.C., Cavanaugh, D.P. Malone and D.A. Siegel. 2011. Wave disturbance overwhelms top-down and bottom-up control of primary production in California kelp forests. Ecology 92:2108Ð2116. Reed, D.C., Carr M.H., Goldwasser, L. and Raimondi, P.T. 2000. Role of dispersal potential in determining the spatial structure of an assemblage of sedentary marine organisms. 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